Getting metadata about Services & Coverages

EMODnetWCS offers a number of functions to download and extract metadata about EMODnet WCS services and available coverages.

Metadata include information about each service, the coverages served by the server and information about individual coverages including the geographic, temporal and elevation extents, grid sizes and resolution, coverage coordinate reference systems and how grid coordinates relate to geographic coordinates as well as the names, units and ranges of bands contained in a coverage.

There are functions for downloading compiled metadata for easy review as well as for extracting individual metadata in more usable forms.

Downloading & extracting compiled metadata on services and coverages.

First let’s load the package and initiate a client to the "biology" EMODnet WCS server.

library(EMODnetWCS)
#> Loading ISO 19139 XML schemas...
#> Loading ISO 19115 codelists...

wcs <- emdn_init_wcs_client(service = "biology")
#> ✔ WCS client created succesfully
#> ℹ Service: <https://geo.vliz.be/geoserver/Emodnetbio/wcs>
#> ℹ Service: "2.0.1"

Getting services level and coverage level summary metadata.

To get service level and a subset of coverage level compiled metadata, we can use function emdn_get_wcs_info().

We can supply a <WCSClient> object through argument wcs to get compiled metadata from the server.

wcs_info <- emdn_get_wcs_info(wcs = wcs)
#> Loading required package: sf
#> Linking to GEOS 3.10.2, GDAL 3.4.2, PROJ 8.2.1; sf_use_s2() is TRUE

wcs_info
#> $data_source
#> [1] "emodnet_wcs"
#> 
#> $service_name
#> [1] "biology"
#> 
#> $service_url
#> [1] "https://geo.vliz.be/geoserver/Emodnetbio/wcs"
#> 
#> $service_title
#> [1] "EMODnet Biology"
#> 
#> $service_abstract
#> [1] "The EMODnet Biology products include a set of gridded map layers showing the average abundance of marine species for different time windows (seasonal, annual) using geospatial modelling. The spatial modelling tool used to calculate the gridded abundance maps is based on DIVA. DIVA (Data-Interpolating Variational Analysis) is a tool to create gridded data sets from discrete point measurements of the ocean. For the representation of time dynamics, it was decided to produce gridded maps for sliding time windows, e.g. combining one or more years  in one gridded map, so that relatively smooth animated GIF presentations can be produced that show the essential change over time. EMODnet Biology’s data products include the Operational Ocean Products and Services (OOPS), harvested by ICES."
#> 
#> $service_access_constraits
#> [1] "NONE"
#> 
#> $service_fees
#> [1] "NONE"
#> 
#> $service_type
#> [1] "urn:ogc:service:wcs"
#> 
#> $coverage_details
#> # A tibble: 10 × 9
#>    coverage_id        dim_n dim_n…¹ extent crs   wgs84…² tempo…³ verti…⁴ subtype
#>    <chr>              <int> <chr>   <chr>  <chr> <chr>   <chr>   <chr>   <chr>  
#>  1 Emodnetbio__ratio…     3 lat(de… -75.0… EPSG… -75.05… 1958-0… NA      Rectif…
#>  2 Emodnetbio__aca_s…     3 lat(de… -75.0… EPSG… -75.05… 1958-0… NA      Rectif…
#>  3 Emodnetbio__cal_f…     3 lat(de… -75.0… EPSG… -75.05… 1958-0… NA      Rectif…
#>  4 Emodnetbio__cal_h…     3 lat(de… -75.0… EPSG… -75.05… 1958-0… NA      Rectif…
#>  5 Emodnetbio__met_l…     3 lat(de… -75.0… EPSG… -75.05… 1958-0… NA      Rectif…
#>  6 Emodnetbio__oit_s…     3 lat(de… -75.0… EPSG… -75.05… 1958-0… NA      Rectif…
#>  7 Emodnetbio__tem_l…     3 lat(de… -75.0… EPSG… -75.05… 1958-0… NA      Rectif…
#>  8 Emodnetbio__chli_…     3 lat(de… -75.0… EPSG… -75.05… 1958-0… NA      Rectif…
#>  9 Emodnetbio__tot_l…     3 lat(de… -75.0… EPSG… -75.05… 1958-0… NA      Rectif…
#> 10 Emodnetbio__tot_s…     3 lat(de… -75.0… EPSG… -75.05… 1958-0… NA      Rectif…
#> # … with abbreviated variable names ¹dim_names, ²wgs84_bbox, ³temporal_extent,
#> #   ⁴vertical_extent

You can get the same information by supplying a service name to argument service instead of a <WCSClient> object to argument wcs.

emdn_get_wcs_info(service = "biology")
#> ✔ WCS client created succesfully
#> ℹ Service: <https://geo.vliz.be/geoserver/Emodnetbio/wcs>
#> ℹ Service: "2.0.1"
#> $data_source
#> [1] "emodnet_wcs"
#> 
#> $service_name
#> [1] "biology"
#> 
#> $service_url
#> [1] "https://geo.vliz.be/geoserver/Emodnetbio/wcs"
#> 
#> $service_title
#> [1] "EMODnet Biology"
#> 
#> $service_abstract
#> [1] "The EMODnet Biology products include a set of gridded map layers showing the average abundance of marine species for different time windows (seasonal, annual) using geospatial modelling. The spatial modelling tool used to calculate the gridded abundance maps is based on DIVA. DIVA (Data-Interpolating Variational Analysis) is a tool to create gridded data sets from discrete point measurements of the ocean. For the representation of time dynamics, it was decided to produce gridded maps for sliding time windows, e.g. combining one or more years  in one gridded map, so that relatively smooth animated GIF presentations can be produced that show the essential change over time. EMODnet Biology’s data products include the Operational Ocean Products and Services (OOPS), harvested by ICES."
#> 
#> $service_access_constraits
#> [1] "NONE"
#> 
#> $service_fees
#> [1] "NONE"
#> 
#> $service_type
#> [1] "urn:ogc:service:wcs"
#> 
#> $coverage_details
#> # A tibble: 10 × 9
#>    coverage_id        dim_n dim_n…¹ extent crs   wgs84…² tempo…³ verti…⁴ subtype
#>    <chr>              <int> <chr>   <chr>  <chr> <chr>   <chr>   <chr>   <chr>  
#>  1 Emodnetbio__ratio…     3 lat(de… -75.0… EPSG… -75.05… 1958-0… NA      Rectif…
#>  2 Emodnetbio__aca_s…     3 lat(de… -75.0… EPSG… -75.05… 1958-0… NA      Rectif…
#>  3 Emodnetbio__cal_f…     3 lat(de… -75.0… EPSG… -75.05… 1958-0… NA      Rectif…
#>  4 Emodnetbio__cal_h…     3 lat(de… -75.0… EPSG… -75.05… 1958-0… NA      Rectif…
#>  5 Emodnetbio__met_l…     3 lat(de… -75.0… EPSG… -75.05… 1958-0… NA      Rectif…
#>  6 Emodnetbio__oit_s…     3 lat(de… -75.0… EPSG… -75.05… 1958-0… NA      Rectif…
#>  7 Emodnetbio__tem_l…     3 lat(de… -75.0… EPSG… -75.05… 1958-0… NA      Rectif…
#>  8 Emodnetbio__chli_…     3 lat(de… -75.0… EPSG… -75.05… 1958-0… NA      Rectif…
#>  9 Emodnetbio__tot_l…     3 lat(de… -75.0… EPSG… -75.05… 1958-0… NA      Rectif…
#> 10 Emodnetbio__tot_s…     3 lat(de… -75.0… EPSG… -75.05… 1958-0… NA      Rectif…
#> # … with abbreviated variable names ¹dim_names, ²wgs84_bbox, ³temporal_extent,
#> #   ⁴vertical_extent

The function returns a list of service level metadata which includes a tibble of summaries of coverage level metadata in the coverage_details element.

Let’s take a closer look at the metadata in coverage_details. For details on these metadata, have a look at the emdn_get_wcs_info() help page (or use ?emdn_get_wcs_info in R or Rstudio).

coverage_id	dim_n	dim_names	extent	crs	wgs84_bbox	temporal_extent	vertical_extent	subtype
Emodnetbio__ratio_large_to_small_19582016_L1_err	3	lat(deg):geographic; long(deg):geographic; time(s):temporal	-75.05, 34.95, 20.05, 75.05	EPSG:4326	-75.05, 34.95, 20.05, 75.05	1958-02-16T00:00:00 - 2016-11-16T00:00:00	NA	RectifiedGridCoverage
Emodnetbio__aca_spp_19582016_L1	3	lat(deg):geographic; long(deg):geographic; time(s):temporal	-75.05, 34.95, 20.05, 75.05	EPSG:4326	-75.05, 34.95, 20.05, 75.05	1958-02-16T00:00:00 - 2016-11-16T00:00:00	NA	RectifiedGridCoverage
Emodnetbio__cal_fin_19582016_L1_err	3	lat(deg):geographic; long(deg):geographic; time(s):temporal	-75.05, 34.95, 20.05, 75.05	EPSG:4326	-75.05, 34.95, 20.05, 75.05	1958-02-16T00:00:00 - 2016-11-16T00:00:00	NA	RectifiedGridCoverage
Emodnetbio__cal_hel_19582016_L1_err	3	lat(deg):geographic; long(deg):geographic; time(s):temporal	-75.05, 34.95, 20.05, 75.05	EPSG:4326	-75.05, 34.95, 20.05, 75.05	1958-02-16T00:00:00 - 2016-11-16T00:00:00	NA	RectifiedGridCoverage
Emodnetbio__met_luc_19582016_L1_err	3	lat(deg):geographic; long(deg):geographic; time(s):temporal	-75.05, 34.95, 20.05, 75.05	EPSG:4326	-75.05, 34.95, 20.05, 75.05	1958-02-16T00:00:00 - 2016-11-16T00:00:00	NA	RectifiedGridCoverage
Emodnetbio__oit_spp_19582016_L1_err	3	lat(deg):geographic; long(deg):geographic; time(s):temporal	-75.05, 34.95, 20.05, 75.05	EPSG:4326	-75.05, 34.95, 20.05, 75.05	1958-02-16T00:00:00 - 2016-11-16T00:00:00	NA	RectifiedGridCoverage
Emodnetbio__tem_lon_19582016_L1_err	3	lat(deg):geographic; long(deg):geographic; time(s):temporal	-75.05, 34.95, 20.05, 75.05	EPSG:4326	-75.05, 34.95, 20.05, 75.05	1958-02-16T00:00:00 - 2016-11-16T00:00:00	NA	RectifiedGridCoverage
Emodnetbio__chli_19582016_L1_err	3	lat(deg):geographic; long(deg):geographic; time(s):temporal	-75.05, 34.95, 20.05, 75.05	EPSG:4326	-75.05, 34.95, 20.05, 75.05	1958-02-16T00:00:00 - 2016-11-16T00:00:00	NA	RectifiedGridCoverage
Emodnetbio__tot_lar_19582016_L1_err	3	lat(deg):geographic; long(deg):geographic; time(s):temporal	-75.05, 34.95, 20.05, 75.05	EPSG:4326	-75.05, 34.95, 20.05, 75.05	1958-02-16T00:00:00 - 2016-11-16T00:00:00	NA	RectifiedGridCoverage
Emodnetbio__tot_sma_19582016_L1_err	3	lat(deg):geographic; long(deg):geographic; time(s):temporal	-75.05, 34.95, 20.05, 75.05	EPSG:4326	-75.05, 34.95, 20.05, 75.05	1958-02-16T00:00:00 - 2016-11-16T00:00:00	NA	RectifiedGridCoverage

You can get metadata for all EMODnet WCS services using emdn_get_wcs_info_all(). Note however that this can take a long time to execute.

emdn_get_wcs_info_all()

Getting coverage level detailed metadata

You can get more detailed coverage metadata about specific coverage using function emdn_get_coverage_info() and supplying a character vector of coverage_ids. Again, you can get the same information by supplying a service name to argument service instead of a <WCSClient> object to argument wcs.

cov_info <- emdn_get_coverage_info(wcs, 
                                   coverage_ids = c(
      "Emodnetbio__ratio_large_to_small_19582016_L1_err",
      "Emodnetbio__cal_fin_19582016_L1_err" 
  )
)

The function returns a tibble of detailed coverage level metadata. Let’s take a closer look.

cov_info

data_source	service_name	service_url	coverage_id	band_description	band_uom	constraint	nil_value	dim_n	dim_names	grid_size	resolution	extent	crs	wgs84_extent	temporal_extent	vertical_extent	subtype	fn_seq_rule	fn_start_point	fn_axis_order
emodnet_wcs	https://geo.vliz.be/geoserver/Emodnetbio/wcs	biology	Emodnetbio__ratio_large_to_small_19582016_L1_err	Relative abundance, Relative error	W.m-2.Sr-1	-3.4028235e+38-3.4028235e+38	9.97e+36	3	lat(deg):geographic; long(deg):geographic; time(s):temporal	951x401	0.1 Deg x 0.1 Deg	-75.05, 34.95, 20.05, 75.05	EPSG:4326	-75.05, 34.95, 20.05, 75.05	1958-02-16T00:00:00 - 2016-11-16T00:00:00	NA	RectifiedGridCoverage	Linear	0,0	+2,+1
emodnet_wcs	https://geo.vliz.be/geoserver/Emodnetbio/wcs	biology	Emodnetbio__cal_fin_19582016_L1_err	Relative abundance, Relative error	W.m-2.Sr-1	-3.4028235e+38-3.4028235e+38	9.97e+36	3	lat(deg):geographic; long(deg):geographic; time(s):temporal	951x401	0.1 Deg x 0.1 Deg	-75.05, 34.95, 20.05, 75.05	EPSG:4326	-75.05, 34.95, 20.05, 75.05	1958-02-16T00:00:00 - 2016-11-16T00:00:00	NA	RectifiedGridCoverage	Linear	0,0	+2,+1

For details on these metadata, have a look at the emdn_get_coverage_info() help page (or use ?emdn_get_coverage_info in R or Rstudio).

Note

To minimize the number of requests sent to webservices, these functions use memoise to cache results inside the active R session. To clear the cache, re-start R or run memoise::forget(emdn_get_wcs_info)/memoise::forget(emdn_get_coverage_info)

Getting individual coverage level metadata

The above functions compile and concatenate metadata into primarily tabular form for easier review. However the package offers a number of functions for extracting individual metadata in more usable forms.

Getting metadata from a `<WCSClient>` object.

Some metadata can be retrieved directly from a <WCSClient> object.

Get coverage_ids

You can extract a character vector of available coverage IDs from a service with function emdn_get_coverage_ids()

emdn_get_coverage_ids(wcs)
#>  [1] "Emodnetbio__ratio_large_to_small_19582016_L1_err"
#>  [2] "Emodnetbio__aca_spp_19582016_L1"                 
#>  [3] "Emodnetbio__cal_fin_19582016_L1_err"             
#>  [4] "Emodnetbio__cal_hel_19582016_L1_err"             
#>  [5] "Emodnetbio__met_luc_19582016_L1_err"             
#>  [6] "Emodnetbio__oit_spp_19582016_L1_err"             
#>  [7] "Emodnetbio__tem_lon_19582016_L1_err"             
#>  [8] "Emodnetbio__chli_19582016_L1_err"                
#>  [9] "Emodnetbio__tot_lar_19582016_L1_err"             
#> [10] "Emodnetbio__tot_sma_19582016_L1_err"

You can also check whether a coverage has a given type of dimension.

# Check for temporal dimension
emdn_has_dimension(
  wcs,
  coverage_ids = c(
      "Emodnetbio__ratio_large_to_small_19582016_L1_err",
      "Emodnetbio__cal_fin_19582016_L1_err" 
  ),
  type = "temporal"
)
#> Emodnetbio__ratio_large_to_small_19582016_L1_err 
#>                                             TRUE 
#>              Emodnetbio__cal_fin_19582016_L1_err 
#>                                             TRUE

# Check for vertical dimension
emdn_has_dimension(
  wcs,
  coverage_ids = c(
      "Emodnetbio__ratio_large_to_small_19582016_L1_err",
      "Emodnetbio__cal_fin_19582016_L1_err" 
  ),
  type = "vertical"
)
#> Emodnetbio__ratio_large_to_small_19582016_L1_err 
#>                                            FALSE 
#>              Emodnetbio__cal_fin_19582016_L1_err 
#>                                            FALSE

Or get the coefficients (points in a given dimension) at which data are available for specific coverages.

emdn_get_coverage_dim_coefs(wcs,
                            coverage_ids = c(
      "Emodnetbio__ratio_large_to_small_19582016_L1_err",
      "Emodnetbio__cal_fin_19582016_L1_err" 
  ),
                            type = "temporal")
#> $Emodnetbio__ratio_large_to_small_19582016_L1_err
#>   [1] "1958-02-16T00:00:00" "1958-05-16T00:00:00" "1958-08-16T00:00:00"
#>   [4] "1958-11-16T00:00:00" "1959-02-16T00:00:00" "1959-05-16T00:00:00"
#>   [7] "1959-08-16T00:00:00" "1959-11-16T00:00:00" "1960-02-16T00:00:00"
#>  [10] "1960-05-16T00:00:00" "1960-08-16T00:00:00" "1960-11-16T00:00:00"
#>  [13] "1961-02-16T00:00:00" "1961-05-16T00:00:00" "1961-08-16T00:00:00"
#>  [16] "1961-11-16T00:00:00" "1962-02-16T00:00:00" "1962-05-16T00:00:00"
#>  [19] "1962-08-16T00:00:00" "1962-11-16T00:00:00" "1963-02-16T00:00:00"
#>  [22] "1963-05-16T00:00:00" "1963-08-16T00:00:00" "1963-11-16T00:00:00"
#>  [25] "1964-02-16T00:00:00" "1964-05-16T00:00:00" "1964-08-16T00:00:00"
#>  [28] "1964-11-16T00:00:00" "1965-02-16T00:00:00" "1965-05-16T00:00:00"
#>  [31] "1965-08-16T00:00:00" "1965-11-16T00:00:00" "1966-02-16T00:00:00"
#>  [34] "1966-05-16T00:00:00" "1966-08-16T00:00:00" "1966-11-16T00:00:00"
#>  [37] "1967-02-16T00:00:00" "1967-05-16T00:00:00" "1967-08-16T00:00:00"
#>  [40] "1967-11-16T00:00:00" "1968-02-16T00:00:00" "1968-05-16T00:00:00"
#>  [43] "1968-08-16T00:00:00" "1968-11-16T00:00:00" "1969-02-16T00:00:00"
#>  [46] "1969-05-16T00:00:00" "1969-08-16T00:00:00" "1969-11-16T00:00:00"
#>  [49] "1970-02-16T00:00:00" "1970-05-16T00:00:00" "1970-08-16T00:00:00"
#>  [52] "1970-11-16T00:00:00" "1971-02-16T00:00:00" "1971-05-16T00:00:00"
#>  [55] "1971-08-16T00:00:00" "1971-11-16T00:00:00" "1972-02-16T00:00:00"
#>  [58] "1972-05-16T00:00:00" "1972-08-16T00:00:00" "1972-11-16T00:00:00"
#>  [61] "1973-02-16T00:00:00" "1973-05-16T00:00:00" "1973-08-16T00:00:00"
#>  [64] "1973-11-16T00:00:00" "1974-02-16T00:00:00" "1974-05-16T00:00:00"
#>  [67] "1974-08-16T00:00:00" "1974-11-16T00:00:00" "1975-02-16T00:00:00"
#>  [70] "1975-05-16T00:00:00" "1975-08-16T00:00:00" "1975-11-16T00:00:00"
#>  [73] "1976-02-16T00:00:00" "1976-05-16T00:00:00" "1976-08-16T00:00:00"
#>  [76] "1976-11-16T00:00:00" "1977-02-16T00:00:00" "1977-05-16T00:00:00"
#>  [79] "1977-08-16T00:00:00" "1977-11-16T00:00:00" "1978-02-16T00:00:00"
#>  [82] "1978-05-16T00:00:00" "1978-08-16T00:00:00" "1978-11-16T00:00:00"
#>  [85] "1979-02-16T00:00:00" "1979-05-16T00:00:00" "1979-08-16T00:00:00"
#>  [88] "1979-11-16T00:00:00" "1980-02-16T00:00:00" "1980-05-16T00:00:00"
#>  [91] "1980-08-16T00:00:00" "1980-11-16T00:00:00" "1981-02-16T00:00:00"
#>  [94] "1981-05-16T00:00:00" "1981-08-16T00:00:00" "1981-11-16T00:00:00"
#>  [97] "1982-02-16T00:00:00" "1982-05-16T00:00:00" "1982-08-16T00:00:00"
#> [100] "1982-11-16T00:00:00" "1983-02-16T00:00:00" "1983-05-16T00:00:00"
#> [103] "1983-08-16T00:00:00" "1983-11-16T00:00:00" "1984-02-16T00:00:00"
#> [106] "1984-05-16T00:00:00" "1984-08-16T00:00:00" "1984-11-16T00:00:00"
#> [109] "1985-02-16T00:00:00" "1985-05-16T00:00:00" "1985-08-16T00:00:00"
#> [112] "1985-11-16T00:00:00" "1986-02-16T00:00:00" "1986-05-16T00:00:00"
#> [115] "1986-08-16T00:00:00" "1986-11-16T00:00:00" "1987-02-16T00:00:00"
#> [118] "1987-05-16T00:00:00" "1987-08-16T00:00:00" "1987-11-16T00:00:00"
#> [121] "1988-02-16T00:00:00" "1988-05-16T00:00:00" "1988-08-16T00:00:00"
#> [124] "1988-11-16T00:00:00" "1989-02-16T00:00:00" "1989-05-16T00:00:00"
#> [127] "1989-08-16T00:00:00" "1989-11-16T00:00:00" "1990-02-16T00:00:00"
#> [130] "1990-05-16T00:00:00" "1990-08-16T00:00:00" "1990-11-16T00:00:00"
#> [133] "1991-02-16T00:00:00" "1991-05-16T00:00:00" "1991-08-16T00:00:00"
#> [136] "1991-11-16T00:00:00" "1992-02-16T00:00:00" "1992-05-16T00:00:00"
#> [139] "1992-08-16T00:00:00" "1992-11-16T00:00:00" "1993-02-16T00:00:00"
#> [142] "1993-05-16T00:00:00" "1993-08-16T00:00:00" "1993-11-16T00:00:00"
#> [145] "1994-02-16T00:00:00" "1994-05-16T00:00:00" "1994-08-16T00:00:00"
#> [148] "1994-11-16T00:00:00" "1995-02-16T00:00:00" "1995-05-16T00:00:00"
#> [151] "1995-08-16T00:00:00" "1995-11-16T00:00:00" "1996-02-16T00:00:00"
#> [154] "1996-05-16T00:00:00" "1996-08-16T00:00:00" "1996-11-16T00:00:00"
#> [157] "1997-02-16T00:00:00" "1997-05-16T00:00:00" "1997-08-16T00:00:00"
#> [160] "1997-11-16T00:00:00" "1998-02-16T00:00:00" "1998-05-16T00:00:00"
#> [163] "1998-08-16T00:00:00" "1998-11-16T00:00:00" "1999-02-16T00:00:00"
#> [166] "1999-05-16T00:00:00" "1999-08-16T00:00:00" "1999-11-16T00:00:00"
#> [169] "2000-02-16T00:00:00" "2000-05-16T00:00:00" "2000-08-16T00:00:00"
#> [172] "2000-11-16T00:00:00" "2001-02-16T00:00:00" "2001-05-16T00:00:00"
#> [175] "2001-08-16T00:00:00" "2001-11-16T00:00:00" "2002-02-16T00:00:00"
#> [178] "2002-05-16T00:00:00" "2002-08-16T00:00:00" "2002-11-16T00:00:00"
#> [181] "2003-02-16T00:00:00" "2003-05-16T00:00:00" "2003-08-16T00:00:00"
#> [184] "2003-11-16T00:00:00" "2004-02-16T00:00:00" "2004-05-16T00:00:00"
#> [187] "2004-08-16T00:00:00" "2004-11-16T00:00:00" "2005-02-16T00:00:00"
#> [190] "2005-05-16T00:00:00" "2005-08-16T00:00:00" "2005-11-16T00:00:00"
#> [193] "2006-02-16T00:00:00" "2006-05-16T00:00:00" "2006-08-16T00:00:00"
#> [196] "2006-11-16T00:00:00" "2007-02-16T00:00:00" "2007-05-16T00:00:00"
#> [199] "2007-08-16T00:00:00" "2007-11-16T00:00:00" "2008-02-16T00:00:00"
#> [202] "2008-05-16T00:00:00" "2008-08-16T00:00:00" "2008-11-16T00:00:00"
#> [205] "2009-02-16T00:00:00" "2009-05-16T00:00:00" "2009-08-16T00:00:00"
#> [208] "2009-11-16T00:00:00" "2010-02-16T00:00:00" "2010-05-16T00:00:00"
#> [211] "2010-08-16T00:00:00" "2010-11-16T00:00:00" "2011-02-16T00:00:00"
#> [214] "2011-05-16T00:00:00" "2011-08-16T00:00:00" "2011-11-16T00:00:00"
#> [217] "2012-02-16T00:00:00" "2012-05-16T00:00:00" "2012-08-16T00:00:00"
#> [220] "2012-11-16T00:00:00" "2013-02-16T00:00:00" "2013-05-16T00:00:00"
#> [223] "2013-08-16T00:00:00" "2013-11-16T00:00:00" "2014-02-16T00:00:00"
#> [226] "2014-05-16T00:00:00" "2014-08-16T00:00:00" "2014-11-16T00:00:00"
#> [229] "2015-02-16T00:00:00" "2015-05-16T00:00:00" "2015-08-16T00:00:00"
#> [232] "2015-11-16T00:00:00" "2016-02-16T00:00:00" "2016-05-16T00:00:00"
#> [235] "2016-08-16T00:00:00" "2016-11-16T00:00:00"
#> attr(,"type")
#> temporal_coefficents
#> 
#> $Emodnetbio__cal_fin_19582016_L1_err
#>   [1] "1958-02-16T00:00:00" "1958-05-16T00:00:00" "1958-08-16T00:00:00"
#>   [4] "1958-11-16T00:00:00" "1959-02-16T00:00:00" "1959-05-16T00:00:00"
#>   [7] "1959-08-16T00:00:00" "1959-11-16T00:00:00" "1960-02-16T00:00:00"
#>  [10] "1960-05-16T00:00:00" "1960-08-16T00:00:00" "1960-11-16T00:00:00"
#>  [13] "1961-02-16T00:00:00" "1961-05-16T00:00:00" "1961-08-16T00:00:00"
#>  [16] "1961-11-16T00:00:00" "1962-02-16T00:00:00" "1962-05-16T00:00:00"
#>  [19] "1962-08-16T00:00:00" "1962-11-16T00:00:00" "1963-02-16T00:00:00"
#>  [22] "1963-05-16T00:00:00" "1963-08-16T00:00:00" "1963-11-16T00:00:00"
#>  [25] "1964-02-16T00:00:00" "1964-05-16T00:00:00" "1964-08-16T00:00:00"
#>  [28] "1964-11-16T00:00:00" "1965-02-16T00:00:00" "1965-05-16T00:00:00"
#>  [31] "1965-08-16T00:00:00" "1965-11-16T00:00:00" "1966-02-16T00:00:00"
#>  [34] "1966-05-16T00:00:00" "1966-08-16T00:00:00" "1966-11-16T00:00:00"
#>  [37] "1967-02-16T00:00:00" "1967-05-16T00:00:00" "1967-08-16T00:00:00"
#>  [40] "1967-11-16T00:00:00" "1968-02-16T00:00:00" "1968-05-16T00:00:00"
#>  [43] "1968-08-16T00:00:00" "1968-11-16T00:00:00" "1969-02-16T00:00:00"
#>  [46] "1969-05-16T00:00:00" "1969-08-16T00:00:00" "1969-11-16T00:00:00"
#>  [49] "1970-02-16T00:00:00" "1970-05-16T00:00:00" "1970-08-16T00:00:00"
#>  [52] "1970-11-16T00:00:00" "1971-02-16T00:00:00" "1971-05-16T00:00:00"
#>  [55] "1971-08-16T00:00:00" "1971-11-16T00:00:00" "1972-02-16T00:00:00"
#>  [58] "1972-05-16T00:00:00" "1972-08-16T00:00:00" "1972-11-16T00:00:00"
#>  [61] "1973-02-16T00:00:00" "1973-05-16T00:00:00" "1973-08-16T00:00:00"
#>  [64] "1973-11-16T00:00:00" "1974-02-16T00:00:00" "1974-05-16T00:00:00"
#>  [67] "1974-08-16T00:00:00" "1974-11-16T00:00:00" "1975-02-16T00:00:00"
#>  [70] "1975-05-16T00:00:00" "1975-08-16T00:00:00" "1975-11-16T00:00:00"
#>  [73] "1976-02-16T00:00:00" "1976-05-16T00:00:00" "1976-08-16T00:00:00"
#>  [76] "1976-11-16T00:00:00" "1977-02-16T00:00:00" "1977-05-16T00:00:00"
#>  [79] "1977-08-16T00:00:00" "1977-11-16T00:00:00" "1978-02-16T00:00:00"
#>  [82] "1978-05-16T00:00:00" "1978-08-16T00:00:00" "1978-11-16T00:00:00"
#>  [85] "1979-02-16T00:00:00" "1979-05-16T00:00:00" "1979-08-16T00:00:00"
#>  [88] "1979-11-16T00:00:00" "1980-02-16T00:00:00" "1980-05-16T00:00:00"
#>  [91] "1980-08-16T00:00:00" "1980-11-16T00:00:00" "1981-02-16T00:00:00"
#>  [94] "1981-05-16T00:00:00" "1981-08-16T00:00:00" "1981-11-16T00:00:00"
#>  [97] "1982-02-16T00:00:00" "1982-05-16T00:00:00" "1982-08-16T00:00:00"
#> [100] "1982-11-16T00:00:00" "1983-02-16T00:00:00" "1983-05-16T00:00:00"
#> [103] "1983-08-16T00:00:00" "1983-11-16T00:00:00" "1984-02-16T00:00:00"
#> [106] "1984-05-16T00:00:00" "1984-08-16T00:00:00" "1984-11-16T00:00:00"
#> [109] "1985-02-16T00:00:00" "1985-05-16T00:00:00" "1985-08-16T00:00:00"
#> [112] "1985-11-16T00:00:00" "1986-02-16T00:00:00" "1986-05-16T00:00:00"
#> [115] "1986-08-16T00:00:00" "1986-11-16T00:00:00" "1987-02-16T00:00:00"
#> [118] "1987-05-16T00:00:00" "1987-08-16T00:00:00" "1987-11-16T00:00:00"
#> [121] "1988-02-16T00:00:00" "1988-05-16T00:00:00" "1988-08-16T00:00:00"
#> [124] "1988-11-16T00:00:00" "1989-02-16T00:00:00" "1989-05-16T00:00:00"
#> [127] "1989-08-16T00:00:00" "1989-11-16T00:00:00" "1990-02-16T00:00:00"
#> [130] "1990-05-16T00:00:00" "1990-08-16T00:00:00" "1990-11-16T00:00:00"
#> [133] "1991-02-16T00:00:00" "1991-05-16T00:00:00" "1991-08-16T00:00:00"
#> [136] "1991-11-16T00:00:00" "1992-02-16T00:00:00" "1992-05-16T00:00:00"
#> [139] "1992-08-16T00:00:00" "1992-11-16T00:00:00" "1993-02-16T00:00:00"
#> [142] "1993-05-16T00:00:00" "1993-08-16T00:00:00" "1993-11-16T00:00:00"
#> [145] "1994-02-16T00:00:00" "1994-05-16T00:00:00" "1994-08-16T00:00:00"
#> [148] "1994-11-16T00:00:00" "1995-02-16T00:00:00" "1995-05-16T00:00:00"
#> [151] "1995-08-16T00:00:00" "1995-11-16T00:00:00" "1996-02-16T00:00:00"
#> [154] "1996-05-16T00:00:00" "1996-08-16T00:00:00" "1996-11-16T00:00:00"
#> [157] "1997-02-16T00:00:00" "1997-05-16T00:00:00" "1997-08-16T00:00:00"
#> [160] "1997-11-16T00:00:00" "1998-02-16T00:00:00" "1998-05-16T00:00:00"
#> [163] "1998-08-16T00:00:00" "1998-11-16T00:00:00" "1999-02-16T00:00:00"
#> [166] "1999-05-16T00:00:00" "1999-08-16T00:00:00" "1999-11-16T00:00:00"
#> [169] "2000-02-16T00:00:00" "2000-05-16T00:00:00" "2000-08-16T00:00:00"
#> [172] "2000-11-16T00:00:00" "2001-02-16T00:00:00" "2001-05-16T00:00:00"
#> [175] "2001-08-16T00:00:00" "2001-11-16T00:00:00" "2002-02-16T00:00:00"
#> [178] "2002-05-16T00:00:00" "2002-08-16T00:00:00" "2002-11-16T00:00:00"
#> [181] "2003-02-16T00:00:00" "2003-05-16T00:00:00" "2003-08-16T00:00:00"
#> [184] "2003-11-16T00:00:00" "2004-02-16T00:00:00" "2004-05-16T00:00:00"
#> [187] "2004-08-16T00:00:00" "2004-11-16T00:00:00" "2005-02-16T00:00:00"
#> [190] "2005-05-16T00:00:00" "2005-08-16T00:00:00" "2005-11-16T00:00:00"
#> [193] "2006-02-16T00:00:00" "2006-05-16T00:00:00" "2006-08-16T00:00:00"
#> [196] "2006-11-16T00:00:00" "2007-02-16T00:00:00" "2007-05-16T00:00:00"
#> [199] "2007-08-16T00:00:00" "2007-11-16T00:00:00" "2008-02-16T00:00:00"
#> [202] "2008-05-16T00:00:00" "2008-08-16T00:00:00" "2008-11-16T00:00:00"
#> [205] "2009-02-16T00:00:00" "2009-05-16T00:00:00" "2009-08-16T00:00:00"
#> [208] "2009-11-16T00:00:00" "2010-02-16T00:00:00" "2010-05-16T00:00:00"
#> [211] "2010-08-16T00:00:00" "2010-11-16T00:00:00" "2011-02-16T00:00:00"
#> [214] "2011-05-16T00:00:00" "2011-08-16T00:00:00" "2011-11-16T00:00:00"
#> [217] "2012-02-16T00:00:00" "2012-05-16T00:00:00" "2012-08-16T00:00:00"
#> [220] "2012-11-16T00:00:00" "2013-02-16T00:00:00" "2013-05-16T00:00:00"
#> [223] "2013-08-16T00:00:00" "2013-11-16T00:00:00" "2014-02-16T00:00:00"
#> [226] "2014-05-16T00:00:00" "2014-08-16T00:00:00" "2014-11-16T00:00:00"
#> [229] "2015-02-16T00:00:00" "2015-05-16T00:00:00" "2015-08-16T00:00:00"
#> [232] "2015-11-16T00:00:00" "2016-02-16T00:00:00" "2016-05-16T00:00:00"
#> [235] "2016-08-16T00:00:00" "2016-11-16T00:00:00"
#> attr(,"type")
#> temporal_coefficents

More detailed metadata requires a further call to the server to a return an object of class <WCSCoverageSummary>.

You can use emdn_get_coverage_summaries() to get <WCSCoverageSummary> objects for specific coverages.

summaries <- emdn_get_coverage_summaries(wcs,
                                         coverage_ids = c(
      "Emodnetbio__ratio_large_to_small_19582016_L1_err",
      "Emodnetbio__cal_fin_19582016_L1_err" 
  )
)

summaries
#> [[1]]
#> <WCSCoverageSummary>
#>   Inherits from: <OGCAbstractObject>
#>   Public:
#>     attrs: list
#>     BoundingBox: list
#>     clone: function (deep = FALSE) 
#>     CoverageId: Emodnetbio__ratio_large_to_small_19582016_L1_err
#>     CoverageSubtype: RectifiedGridCoverage
#>     CoverageSubtypeParent: NULL
#>     defaults: list
#>     element: AbstractObject
#>     encode: function (addNS = TRUE, geometa_validate = TRUE, geometa_inspire = FALSE, 
#>     ERROR: function (text) 
#>     getBoundingBox: function () 
#>     getClass: function () 
#>     getClassName: function () 
#>     getCoverage: function (bbox = NULL, crs = NULL, time = NULL, elevation = NULL, 
#>     getCoverageStack: function (time = NULL, elevation = NULL, bbox = NULL, filename_handler = NULL, 
#>     getDescription: function () 
#>     getDimensions: function () 
#>     getId: function () 
#>     getNamespaceDefinition: function (recursive = FALSE) 
#>     getSubtype: function () 
#>     getSubtypeParent: function () 
#>     getWGS84BoundingBox: function () 
#>     INFO: function (text) 
#>     initialize: function (xmlObj, capabilities, serviceVersion, owsVersion, logger = NULL) 
#>     isFieldInheritedFrom: function (field) 
#>     logger: function (type, text) 
#>     loggerType: NULL
#>     namespace: OWSNamespace, R6
#>     verbose.debug: FALSE
#>     verbose.info: FALSE
#>     WARN: function (text) 
#>     WGS84BoundingBox: list
#>     wrap: FALSE
#>   Private:
#>     capabilities: WCSCapabilities, OWSCapabilities, OGCAbstractObject, R6
#>     description: WCSCoverageDescription, GMLCOVAbstractCoverage, GMLAbstractCoverage, GMLAbstractFeature, GMLAbstractObject, ISOAbstractObject, geometaLogger, R6
#>     dimensions: list
#>     fetchCoverageSummary: function (xmlObj, serviceVersion, owsVersion) 
#>     fromComplexTypes: function (value) 
#>     owsVersion: 2.0
#>     system_fields: verbose.info verbose.debug loggerType wrap element names ...
#>     url: https://geo.vliz.be/geoserver/Emodnetbio/wcs
#>     version: 2.0.1
#>     xmlElement: AbstractObject
#>     xmlExtraNamespaces: NULL
#>     xmlNamespacePrefix: OWS
#>     xmlNodeToCharacter: function (x, ..., indent = "", tagSeparator = "\n") 
#> 
#> [[2]]
#> <WCSCoverageSummary>
#>   Inherits from: <OGCAbstractObject>
#>   Public:
#>     attrs: list
#>     BoundingBox: list
#>     clone: function (deep = FALSE) 
#>     CoverageId: Emodnetbio__cal_fin_19582016_L1_err
#>     CoverageSubtype: RectifiedGridCoverage
#>     CoverageSubtypeParent: NULL
#>     defaults: list
#>     element: AbstractObject
#>     encode: function (addNS = TRUE, geometa_validate = TRUE, geometa_inspire = FALSE, 
#>     ERROR: function (text) 
#>     getBoundingBox: function () 
#>     getClass: function () 
#>     getClassName: function () 
#>     getCoverage: function (bbox = NULL, crs = NULL, time = NULL, elevation = NULL, 
#>     getCoverageStack: function (time = NULL, elevation = NULL, bbox = NULL, filename_handler = NULL, 
#>     getDescription: function () 
#>     getDimensions: function () 
#>     getId: function () 
#>     getNamespaceDefinition: function (recursive = FALSE) 
#>     getSubtype: function () 
#>     getSubtypeParent: function () 
#>     getWGS84BoundingBox: function () 
#>     INFO: function (text) 
#>     initialize: function (xmlObj, capabilities, serviceVersion, owsVersion, logger = NULL) 
#>     isFieldInheritedFrom: function (field) 
#>     logger: function (type, text) 
#>     loggerType: NULL
#>     namespace: OWSNamespace, R6
#>     verbose.debug: FALSE
#>     verbose.info: FALSE
#>     WARN: function (text) 
#>     WGS84BoundingBox: list
#>     wrap: FALSE
#>   Private:
#>     capabilities: WCSCapabilities, OWSCapabilities, OGCAbstractObject, R6
#>     description: WCSCoverageDescription, GMLCOVAbstractCoverage, GMLAbstractCoverage, GMLAbstractFeature, GMLAbstractObject, ISOAbstractObject, geometaLogger, R6
#>     dimensions: list
#>     fetchCoverageSummary: function (xmlObj, serviceVersion, owsVersion) 
#>     fromComplexTypes: function (value) 
#>     owsVersion: 2.0
#>     system_fields: verbose.info verbose.debug loggerType wrap element names ...
#>     url: https://geo.vliz.be/geoserver/Emodnetbio/wcs
#>     version: 2.0.1
#>     xmlElement: AbstractObject
#>     xmlExtraNamespaces: NULL
#>     xmlNamespacePrefix: OWS
#>     xmlNodeToCharacter: function (x, ..., indent = "", tagSeparator = "\n")

Alternativelly you can request <WCSCoverageSummary> objects for all coverages available from a service.

emdn_get_coverage_summaries_all(wcs)

Both functions return a list of objects of class <WCSCoverageSummary>, one for each coverage requested / available through the service.

These objects can then be used to extract individual metadata.

Getting metadata from a `<WCSCoverageSummary>` object.

Once you have obtained a <WCSCoverageSummary> object for a coverage you are interested in, you can extract a number of metadata in more usable forms.

Let’s work with a single <WCSCoverageSummary> object returned in the previous step for coverage "Emodnetbio__ratio_large_to_small_19582016_L1_err".

summary <- summaries[[1]]

`emdn_get_bbox()`

Get the bounding box (geographic extent) of a coverage. Coordinates are given in the same Coordinate Reference System as the coverage.

Get bbox

Get the bounding box (geographic extent) of a coverage. Coordinates are given in the same Coordinate Reference System of the the coverage.

emdn_get_bbox(summary)
#>   xmin   ymin   xmax   ymax 
#> -75.05  34.95  20.05  75.05

Get WGS84 bbox

Get the bounding box (geographic extent) of a coverage in World Geodetic System 1984 (WGS84) Coordinate Reference System (or EPSG:4326).

emdn_get_WGS84bbox(summary)
#>   xmin   ymin   xmax   ymax 
#> -75.05  34.95  20.05  75.05

Get the nil value of a coverage

Get the value representing nil values in a coverage.

emdn_get_band_nil_values(summary)
#> Relative abundance     Relative error 
#>        9.96921e+36        9.96921e+36

Get coverage band descriptions

Get the band descriptions of a coverage.

emdn_get_band_descriptions(summary)
#> [1] "Relative abundance" "Relative error"    
#> attr(,"uom")
#> [1] "W.m-2.Sr-1" "W.m-2.Sr-1"

Get band units of measurement

Get the units of measurement of the data contained in the bands values of a coverage.

emdn_get_band_uom(summary)
#> Relative abundance     Relative error 
#>       "W.m-2.Sr-1"       "W.m-2.Sr-1"

Get range of band values

Get the range of values of the data contained in the bands of the coverage.

emdn_get_band_constraints(summary)
#> $`Relative abundance`
#> [1] -3.402823e+38  3.402823e+38
#> 
#> $`Relative error`
#> [1] -3.402823e+38  3.402823e+38

Get coverage grid size

Get the grid size of a coverage.

emdn_get_grid_size(summary)
#> ncol nrow 
#>  951  401

Get coverage resolution

Get the resolution of a coverage.

emdn_get_resolution(summary)
#>   x   y 
#> 0.1 0.1 
#> attr(,"uom")
#> [1] "Deg" "Deg"

Get coverage grid function

Get the grid function of a coverage.

emdn_get_coverage_function(summary)
#> $sequence_rule
#> [1] "Linear"
#> 
#> $start_point
#> [1] 0 0
#> 
#> $axis_order
#> [1] "+2" "+1"

Get the extent of the temporal dimension

Get the temporal extent of a coverage.

emdn_get_temporal_extent(summary)
#> [1] "1958-02-16T00:00:00" "2016-11-16T00:00:00"

Get the extent of the vertical dimension

Get the vertical (elevation) extent of a coverage.

emdn_get_vertical_extent(summary)
#> [1] NA

Get information about coverage dimensions in various formats

Get information on dimensions of a coverage in various formats. Information includes dimension label, type, unit and range (in tibble format).

emdn_get_dimensions_info(summary)
#> lat(deg):geographic; long(deg):geographic; time(s):temporal
emdn_get_dimensions_info(summary, format = "list")
#> $dim_1
#> $dim_1$label
#> [1] "Lat"
#> 
#> $dim_1$uom
#> [1] "Deg"
#> 
#> $dim_1$type
#> [1] "geographic"
#> 
#> 
#> $dim_2
#> $dim_2$label
#> [1] "Long"
#> 
#> $dim_2$uom
#> [1] "Deg"
#> 
#> $dim_2$type
#> [1] "geographic"
#> 
#> 
#> $dim_3
#> $dim_3$label
#> [1] "time"
#> 
#> $dim_3$uom
#> [1] "s"
#> 
#> $dim_3$type
#> [1] "temporal"
emdn_get_dimensions_info(summary, format = "tibble")

dimension	label	uom	type	range
1	lat	deg	geographic
2	long	deg	geographic
3	time	s	temporal	1958-02-16T00:00:00 - 2016-11-16T00:00:00

Get dimension names

Get coverage dimension names (labels) and units.

emdn_get_dimensions_names(summary)
#> [1] "Lat (Deg), Long (Deg), time (s)"

Get number of dimensions

Get number of coverage dimensions.

emdn_get_dimensions_n(summary)
#> [1] 3

Get dimensions types

Get dimensions types of a coverage.

emdn_get_dimension_types(summary)
#> [1] "geographic" "geographic" "temporal"